LINC02406

Across TCGA patient cohorts, LINC02406 RNA expression is significantly associated with the RNA expression of many other genes, with 11,196 significant associations in total. TGCT shows the largest number of these associations.

The most reproducible LINC02406-associated genes across cancer lineages are CPNE8-AS1, CPNE8, and MYH15. Each is linked with LINC02406 in more than 11 cancer types. Because this analysis shows association rather than direction, both LINC02406-to-partner and partner-to-LINC02406 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, LINC02406 versus CPNE8-AS1 in TGCT, with a Pearson correlation of 0.67.

RNA expression associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC02406→partner) and Y-score (partner→LINC02406) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
TGCT	CPNE8-AS1 →	+1.007	+1.734	<.001	<.001	3	12
THYM	CPNE8 →	+1.073	+0.169	<.001	<.001	3	12
PCPG	MYH15 →	+0.854	+0.501	<.001	<.001	3	9
CHOL	CFAP94 →	+0.927	+0.645	<.001	.009	2	10
STAD	RN7SKP60 →	+0.539	+0.168	<.001	<.001	3	9
LIHC	EPHA6 →	+0.783	+0.065	<.001	<.001	3	9

Each partner links to its Q-omics profile. Showing the 6 strongest of 11,196 associations by consensus.

LINC02406 vs CPNE8-AS1 — TGCT

Explore this scatter interactively →