LINC02404

Across TCGA patient cohorts, LINC02404 RNA expression is significantly associated with the go_rna of many other GO terms, with 6,082 significant associations in total. LIHC shows the largest number of these associations.

The most reproducible LINC02404-associated GO terms across cancer lineages are Mitotic metaphase chromosome alignment, Aerobic respiration, and Quinone metabolic process. Each is linked with LINC02404 in more than 7 cancer types. Because this analysis shows association rather than direction, both LINC02404-to-partner and partner-to-LINC02404 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, Mitotic metaphase chromosome alignment grouped by LINC02404-low versus LINC02404-high in THYM.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC02404→partner) and Y-score (partner→LINC02404) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
THYM	Mitotic metaphase chromosome alignment →	+0.050	+0.073	<.001	<.001	3	8
HNSC	Aerobic respiration →	+0.019	+0.199	<.001	<.001	3	7
STAD	Quinone metabolic process →	+0.037	+0.756	<.001	<.001	3	7
THYM	Protein localization to condensed chromosome →	+0.063	+0.072	.002	.005	3	7
THYM	Spindle organization →	+0.030	+0.050	<.001	.001	3	7
THYM	Regulation of attachment of spindle microtubules to kinetochore →	+0.054	+0.060	<.001	<.001	3	7

Each partner links to its Q-omics profile. Showing the 6 strongest of 6,082 associations by consensus.

Mitotic metaphase chromosome alignment by LINC02404 expression — THYM

Explore this box plot interactively →