LINC02399

Across TCGA patient cohorts, LINC02399 RNA expression is significantly associated with the go_rna of many other GO terms, with 6,181 significant associations in total. STAD shows the largest number of these associations.

The most reproducible LINC02399-associated GO terms across cancer lineages are Carbohydrate catabolic process, Regulation of organelle assembly, and Regulation of cysteine-type endopeptidase activity involved in apoptotic process. Each is linked with LINC02399 in more than 11 cancer types. Because this analysis shows association rather than direction, both LINC02399-to-partner and partner-to-LINC02399 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, Carbohydrate catabolic process grouped by LINC02399-low versus LINC02399-high in STAD.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC02399→partner) and Y-score (partner→LINC02399) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
STAD	Carbohydrate catabolic process →	+0.060	+0.162	<.001	<.001	3	12
STAD	Regulation of organelle assembly →	+0.066	+0.172	<.001	<.001	3	12
STAD	Regulation of cysteine-type endopeptidase activity involved in apoptotic process →	+0.068	+0.160	<.001	<.001	3	12
STAD	Protein localization to nucleoplasm →	+0.072	+0.132	<.001	<.001	3	11
STAD	Regulation of mitochondrion organization →	+0.065	+0.154	<.001	<.001	3	11
STAD	Peptidyl-lysine modification →	+0.062	+0.168	<.001	<.001	3	11

Each partner links to its Q-omics profile. Showing the 6 strongest of 6,181 associations by consensus.

Carbohydrate catabolic process by LINC02399 expression — STAD

Explore this box plot interactively →