LINC02309

Across TCGA patient cohorts, LINC02309 RNA expression is significantly associated with the go_rna of many other GO terms, with 6,215 significant associations in total. STAD shows the largest number of these associations.

The most reproducible LINC02309-associated GO terms across cancer lineages are DNA repair-dependent chromatin remodeling, Skeletal system morphogenesis, and Positive regulation of binding. Each is linked with LINC02309 in more than 6 cancer types. Because this analysis shows association rather than direction, both LINC02309-to-partner and partner-to-LINC02309 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, DNA repair-dependent chromatin remodeling grouped by LINC02309-low versus LINC02309-high in ESCA.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC02309→partner) and Y-score (partner→LINC02309) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
ESCA	DNA repair-dependent chromatin remodeling →	+0.109	+0.148	<.001	.002	3	7
ESCA	Skeletal system morphogenesis →	+0.108	+0.359	<.001	<.001	3	7
ESCA	Positive regulation of binding →	+0.135	+0.238	<.001	<.001	3	7
STAD	Lipid homeostasis →	+0.064	+0.215	<.001	<.001	3	7
ESCA	Regulation of carbohydrate metabolic process →	+0.105	+0.336	<.001	<.001	3	7
ESCA	Transcription initiation at RNA polymerase II promoter →	+0.140	+0.170	<.001	<.001	3	7

Each partner links to its Q-omics profile. Showing the 6 strongest of 6,215 associations by consensus.

DNA repair-dependent chromatin remodeling by LINC02309 expression — ESCA

Explore this box plot interactively →