Across TCGA patient cohorts, LINC02249 mutation is significantly associated with the RNA expression of many other genes, with 13 significant associations in total. UCEC shows the largest number of these associations.

The most reproducible LINC02249-associated genes across cancer lineages are RNU6-1082P, SC4MOP, and RPL39P25. Each is linked with LINC02249 in more than 1 cancer types. Because this analysis shows association rather than direction, both LINC02249-to-partner and partner-to-LINC02249 results are reported.

Each partner links to its own Q-omics profile.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC02249→partner) and Y-score (partner→LINC02249) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
UCEC	RNU6-1082P →	+0.610	+4.551	<.001	.009	3	1
UCEC	SC4MOP →	+0.113	+5.453	<.001	.002	3	1
UCEC	RPL39P25 →	+0.484	+4.423	<.001	.006	3	1
UCEC	COX6B1P2 →	+0.442	+4.211	.002	.009	3	1
UCEC	SNRPGP7 →	+0.437	+5.335	<.001	.003	3	1
UCEC	RN7SL454P →	+0.446	+4.423	<.001	.006	3	1

Each partner links to its Q-omics profile. Showing the 6 strongest of 13 associations by consensus.

Exploration

LINC02249 survival (RNA) · tumor vs normal (RNA) · all LINC02249 data types