LINC02239

Across TCGA patient cohorts, LINC02239 RNA expression is significantly associated with the go_rna of many other GO terms, with 6,182 significant associations in total. STAD shows the largest number of these associations.

The most reproducible LINC02239-associated GO terms across cancer lineages are mRNA 3'-end processing, Regulation of DNA repair, and Positive regulation of DNA metabolic process. Each is linked with LINC02239 in more than 8 cancer types. Because this analysis shows association rather than direction, both LINC02239-to-partner and partner-to-LINC02239 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, mRNA 3'-end processing grouped by LINC02239-low versus LINC02239-high in STAD.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC02239→partner) and Y-score (partner→LINC02239) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
STAD	mRNA 3'-end processing →	+0.110	+0.052	<.001	<.001	3	9
STAD	Regulation of DNA repair →	+0.108	+0.052	<.001	<.001	3	9
STAD	Positive regulation of DNA metabolic process →	+0.109	+0.054	<.001	<.001	3	8
STAD	Regulation of binding →	+0.107	+0.050	<.001	<.001	3	8
STAD	Regulation of cell projection assembly →	+0.096	+0.052	<.001	<.001	3	8
STAD	Regulation of pattern recognition receptor signaling pathway →	+0.094	+0.042	<.001	<.001	3	8

Each partner links to its Q-omics profile. Showing the 6 strongest of 6,182 associations by consensus.

mRNA 3'-end processing by LINC02239 expression — STAD

Explore this box plot interactively →