LINC01997

Across TCGA patient cohorts, LINC01997 RNA expression is significantly associated with the go_rna of many other GO terms, with 6,189 significant associations in total. STAD shows the largest number of these associations.

The most reproducible LINC01997-associated GO terms across cancer lineages are Negative regulation of gene expression, epigenetic, Transcription preinitiation complex assembly, and Spliceosomal complex assembly. Each is linked with LINC01997 in more than 10 cancer types. Because this analysis shows association rather than direction, both LINC01997-to-partner and partner-to-LINC01997 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, Negative regulation of gene expression, epigenetic grouped by LINC01997-low versus LINC01997-high in STAD.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01997→partner) and Y-score (partner→LINC01997) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
STAD	Negative regulation of gene expression, epigenetic →	+0.113	+0.080	<.001	<.001	3	11
STAD	Transcription preinitiation complex assembly →	+0.122	+0.068	<.001	<.001	3	10
STAD	Spliceosomal complex assembly →	+0.116	+0.065	<.001	<.001	3	10
STAD	Regulation of organelle assembly →	+0.113	+0.073	<.001	<.001	3	9
STAD	Import into nucleus →	+0.127	+0.072	<.001	<.001	3	9
STAD	Double-strand break repair via nonhomologous end joining →	+0.107	+0.063	<.001	<.001	3	9

Each partner links to its Q-omics profile. Showing the 6 strongest of 6,189 associations by consensus.

Negative regulation of gene expression, epigenetic by LINC01997 expression — STAD

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