LINC01952

Across TCGA patient cohorts, LINC01952 RNA expression is significantly associated with the protein abundance of many other proteins, with 9,707 significant associations in total. GBM shows the largest number of these associations.

The most reproducible LINC01952-associated proteins across cancer lineages are SMC1A, MSH2, and RFC2. Each is linked with LINC01952 in more than 6 cancer types. Because this analysis shows association rather than direction, both LINC01952-to-partner and partner-to-LINC01952 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, LINC01952 versus SMC1A in GBM, with a Pearson correlation of 0.44.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01952→partner) and Y-score (partner→LINC01952) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
GBM	SMC1A →	+0.438	+0.696	<.001	<.001	3	7
LSCC	MSH2 →	+0.520	+0.647	.001	.002	3	6
GBM	RFC2 →	+0.412	+0.957	<.001	<.001	3	6
GBM	POGZ →	+0.267	+0.658	<.001	<.001	3	6
LSCC	RFC3 →	+0.352	+0.706	<.001	<.001	3	6
LSCC	SMC2 →	+0.601	+0.715	<.001	<.001	3	6

Each partner links to its Q-omics profile. Showing the 6 strongest of 9,707 associations by consensus.

LINC01952 vs SMC1A — GBM

Explore this scatter interactively →