LINC01939

Across TCGA patient cohorts, LINC01939 RNA expression is significantly associated with the RNA expression of many other genes, with 3,558 significant associations in total. THYM shows the largest number of these associations.

The most reproducible LINC01939-associated genes across cancer lineages are LINC01115, SNTG2-AS1, and SNTG2. Each is linked with LINC01939 in more than 23 cancer types. Because this analysis shows association rather than direction, both LINC01939-to-partner and partner-to-LINC01939 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, LINC01939 versus LINC01115 in BRCA, with a Pearson correlation of 0.57.

RNA expression associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01939→partner) and Y-score (partner→LINC01939) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
BRCA	LINC01115 →	+0.909	+0.134	<.001	<.001	3	24
CESC	SNTG2-AS1 →	+1.548	+0.225	<.001	.001	3	15
SARC	SNTG2 →	+0.737	+0.088	<.001	.001	2	14
THYM	CSAD →	+0.587	+0.122	<.001	<.001	3	7
KICH	MTCO3P41 →	+0.518	+0.050	<.001	<.001	3	6
KICH	LINC02480 →	+0.790	+0.040	<.001	<.001	3	6

Each partner links to its Q-omics profile. Showing the 6 strongest of 3,558 associations by consensus.

LINC01939 vs LINC01115 — BRCA

Explore this scatter interactively →