LINC01939

Across TCGA patient cohorts, LINC01939 RNA expression is significantly associated with the go_rna of many other GO terms, with 4,829 significant associations in total. STAD shows the largest number of these associations.

The most reproducible LINC01939-associated GO terms across cancer lineages are Protein K11-linked ubiquitination, Stem cell differentiation, and Protein targeting to lysosome. Each is linked with LINC01939 in more than 6 cancer types. Because this analysis shows association rather than direction, both LINC01939-to-partner and partner-to-LINC01939 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, Protein K11-linked ubiquitination grouped by LINC01939-low versus LINC01939-high in STAD.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01939→partner) and Y-score (partner→LINC01939) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
STAD	Protein K11-linked ubiquitination →	+0.068	+0.085	<.001	.003	3	7
STAD	Stem cell differentiation →	+0.057	+0.064	<.001	.002	3	7
STAD	Protein targeting to lysosome →	+0.070	+0.063	<.001	.004	3	7
STAD	Nucleoside triphosphate metabolic process →	+0.077	+0.070	<.001	.002	3	7
STAD	Protein localization to cytoplasmic stress granule →	+0.084	+0.068	<.001	.003	3	6
STAD	Morphogenesis of a polarized epithelium →	+0.050	+0.099	<.001	<.001	3	6

Each partner links to its Q-omics profile. Showing the 6 strongest of 4,829 associations by consensus.

Protein K11-linked ubiquitination by LINC01939 expression — STAD

Explore this box plot interactively →