LINC01909

Across TCGA patient cohorts, LINC01909 RNA expression is significantly associated with the protein abundance of many other proteins, with 11,310 significant associations in total. BRCA shows the largest number of these associations.

The most reproducible LINC01909-associated proteins across cancer lineages are SEC63_T537, AMPD2_S190, and VPS13D_S2671. Each is linked with LINC01909 in more than 4 cancer types. Because this analysis shows association rather than direction, both LINC01909-to-partner and partner-to-LINC01909 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, LINC01909 versus SEC63_T537 in PDAC, with a Pearson correlation of -0.44.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01909→partner) and Y-score (partner→LINC01909) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
PDAC	SEC63_T537 →	-0.932	-0.720	<.001	<.001	3	5
GBM	AMPD2_S190 →	-0.787	-0.784	<.001	<.001	3	4
PDAC	VPS13D_S2671 →	-1.142	-0.845	<.001	<.001	3	4
PDAC	MPRIP_S800 →	-1.168	-0.675	<.001	<.001	3	4
PDAC	CAST_S499 →	-0.618	-0.683	<.001	<.001	3	4
CCRCC	DENND4C_S1623 →	-0.742	-0.698	<.001	<.001	3	4

Each partner links to its Q-omics profile. Showing the 6 strongest of 11,310 associations by consensus.

LINC01909 vs SEC63_T537 — PDAC

Explore this scatter interactively →