LINC01904

Across TCGA patient cohorts, LINC01904 RNA expression is significantly associated with the go_rna of many other GO terms, with 6,284 significant associations in total. STAD shows the largest number of these associations.

The most reproducible LINC01904-associated GO terms across cancer lineages are Metaphase chromosome alignment, Protein-DNA complex assembly, and DNA conformation change. Each is linked with LINC01904 in more than 8 cancer types. Because this analysis shows association rather than direction, both LINC01904-to-partner and partner-to-LINC01904 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, Metaphase chromosome alignment grouped by LINC01904-low versus LINC01904-high in STAD.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01904→partner) and Y-score (partner→LINC01904) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
STAD	Metaphase chromosome alignment →	+0.102	+0.055	<.001	<.001	3	8
STAD	Protein-DNA complex assembly →	+0.080	+0.064	<.001	<.001	3	8
STAD	DNA conformation change →	+0.084	+0.054	<.001	<.001	3	8
STAD	Maturation of 5.8S rRNA →	+0.093	+0.051	<.001	<.001	3	8
STAD	Mitotic spindle organization →	+0.099	+0.064	<.001	<.001	3	8
STAD	Aerobic respiration →	+0.116	+0.057	<.001	<.001	3	8

Each partner links to its Q-omics profile. Showing the 6 strongest of 6,284 associations by consensus.

Metaphase chromosome alignment by LINC01904 expression — STAD

Explore this box plot interactively →