LINC01643

Across TCGA patient cohorts, LINC01643 RNA expression is significantly associated with the protein abundance of many other proteins, with 9,328 significant associations in total. GBM shows the largest number of these associations.

The most reproducible LINC01643-associated proteins across cancer lineages are TAMALIN, VPS26B, and TRAPPC9. Each is linked with LINC01643 in more than 1 cancer types. Because this analysis shows association rather than direction, both LINC01643-to-partner and partner-to-LINC01643 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, LINC01643 versus TAMALIN in GBM, with a Pearson correlation of 0.53.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01643→partner) and Y-score (partner→LINC01643) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
GBM	TAMALIN →	+0.634	+0.106	<.001	<.001	3	2
BRCA	VPS26B →	+0.224	+0.033	<.001	.009	3	2
GBM	TRAPPC9 →	+0.138	+0.084	<.001	<.001	3	2
LSCC	MICAL3_S1649 →	+0.625	+0.014	.002	.003	3	2
BRCA	PTPN22_S692 →	-0.575	-0.022	.002	.004	3	2
BRCA	RABL6 →	+0.296	+0.029	<.001	.007	3	2

Each partner links to its Q-omics profile. Showing the 6 strongest of 9,328 associations by consensus.

LINC01643 vs TAMALIN — GBM

Explore this scatter interactively →