LINC01643

Across TCGA patient cohorts, LINC01643 RNA expression is significantly associated with the go_rna of many other GO terms, with 6,448 significant associations in total. STAD shows the largest number of these associations.

The most reproducible LINC01643-associated GO terms across cancer lineages are Peptidyl-lysine modification, DNA integrity checkpoint signaling, and Microtubule cytoskeleton organization involved in mitosis. Each is linked with LINC01643 in more than 8 cancer types. Because this analysis shows association rather than direction, both LINC01643-to-partner and partner-to-LINC01643 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, Peptidyl-lysine modification grouped by LINC01643-low versus LINC01643-high in STAD.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01643→partner) and Y-score (partner→LINC01643) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
STAD	Peptidyl-lysine modification →	+0.077	+0.176	<.001	<.001	3	9
STAD	DNA integrity checkpoint signaling →	+0.083	+0.163	<.001	<.001	3	9
STAD	Microtubule cytoskeleton organization involved in mitosis →	+0.090	+0.156	<.001	<.001	3	8
STAD	Negative regulation of supramolecular fiber organization →	+0.063	+0.158	<.001	<.001	3	8
STAD	Regulation of protein targeting →	+0.077	+0.167	<.001	<.001	3	8
STAD	Regulation of establishment of protein localization to mitochondrion →	+0.076	+0.164	<.001	<.001	3	8

Each partner links to its Q-omics profile. Showing the 6 strongest of 6,448 associations by consensus.

Peptidyl-lysine modification by LINC01643 expression — STAD

Explore this box plot interactively →