LINC01620

Across TCGA patient cohorts, LINC01620 mutation is significantly associated with the RNA expression of many other genes, with 13 significant associations in total. KIRP shows the largest number of these associations.

The most reproducible LINC01620-associated genes across cancer lineages are MIR3649, RNU6-371P, and RNU6-364P. Each is linked with LINC01620 in more than 1 cancer types. Because this analysis shows association rather than direction, both LINC01620-to-partner and partner-to-LINC01620 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, MIR3649 grouped by LINC01620-low versus LINC01620-high in KIRP.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01620→partner) and Y-score (partner→LINC01620) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
KIRP	MIR3649 →	+0.774	+4.967	<.001	.009	3	1
COAD	RNU6-371P →	+0.596	+7.741	<.001	.009	3	1
COAD	RNU6-364P →	+0.418	+7.741	<.001	.009	3	1
COAD	MIR1283-2 →	+0.488	+7.741	<.001	.009	3	1
COAD	RN7SKP223 →	+0.613	+7.741	<.001	.009	3	1
KIRP	OR11N1P →	+0.078	+6.528	<.001	.001	3	1

Each partner links to its Q-omics profile. Showing the 6 strongest of 13 associations by consensus.

MIR3649 by LINC01620 expression — KIRP

Explore this box plot interactively →