LINC01559

Across TCGA patient cohorts, LINC01559 mutation is significantly associated with the RNA expression of many other genes, with 97 significant associations in total. UCEC shows the largest number of these associations.

The most reproducible LINC01559-associated genes across cancer lineages are TBC1D22A, RNU6-276P, and SEPTIN14P17. Each is linked with LINC01559 in more than 1 cancer types. Because this analysis shows association rather than direction, both LINC01559-to-partner and partner-to-LINC01559 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, TBC1D22A grouped by LINC01559-low versus LINC01559-high in SKCM.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01559→partner) and Y-score (partner→LINC01559) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
SKCM	TBC1D22A →	+0.499	+3.214	.007	.009	3	2
SKCM	RNU6-276P →	+0.138	+4.485	<.001	.004	3	2
BRCA	SEPTIN14P17 →	+0.228	+4.575	<.001	.009	3	1
BRCA	RFPL4AP1 →	+0.038	+5.064	.009	.004	3	1
BRCA	FKBP4P2 →	+0.061	+4.782	<.001	.003	3	1
SKCM	OR7E46P →	+0.030	+2.783	<.001	.007	3	1

Each partner links to its Q-omics profile. Showing the 6 strongest of 97 associations by consensus.

TBC1D22A by LINC01559 expression — SKCM

Explore this box plot interactively →