LINC01558

Across TCGA patient cohorts, LINC01558 mutation is significantly associated with the RNA expression of many other genes, with 32 significant associations in total. UCEC shows the largest number of these associations.

The most reproducible LINC01558-associated genes across cancer lineages are LINC02104, IL21, and RN7SL378P. Each is linked with LINC01558 in more than 1 cancer types. Because this analysis shows association rather than direction, both LINC01558-to-partner and partner-to-LINC01558 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, LINC02104 grouped by LINC01558-low versus LINC01558-high in UCEC.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01558→partner) and Y-score (partner→LINC01558) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
UCEC	LINC02104 →	+0.333	+3.468	.001	.006	3	1
UCEC	IL21 →	+0.205	+3.611	<.001	.001	3	1
UCEC	RN7SL378P →	+0.252	+3.021	<.001	.006	3	1
UCEC	RNA5SP429 →	+1.117	+3.134	<.001	.004	3	1
UCEC	RNU1-138P →	+0.300	+3.418	<.001	.002	3	1
UCEC	TRAJ25 →	+0.476	+3.814	<.001	.002	3	1

Each partner links to its Q-omics profile. Showing the 6 strongest of 32 associations by consensus.

LINC02104 by LINC01558 expression — UCEC

Explore this box plot interactively →