LINC01556

RNA expression — cross-omics
Cross-omicsRNA → FUNCTION-RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, LINC01556 RNA expression is significantly associated with the go_rna of many other GO terms, with 6,443 significant associations in total. LGG shows the largest number of these associations.

The most reproducible LINC01556-associated GO terms across cancer lineages are Nucleoside metabolic process, Negative regulation of viral genome replication, and Antigen processing and presentation of peptide antigen via MHC class Ib. Each is linked with LINC01556 in more than 12 cancer types. Because this analysis shows association rather than direction, both LINC01556-to-partner and partner-to-LINC01556 results are reported.

Each partner links to its own Q-omics profile.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01556→partner) and Y-score (partner→LINC01556) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner GO termX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
STADNucleoside metabolic process →+0.039+0.400<.001<.001313
STADNegative regulation of viral genome replication →+0.053+0.399<.001.001213
SKCMAntigen processing and presentation of peptide antigen via MHC class Ib →+0.046+0.342<.001<.001312
OVMDA-5 signaling pathway →+0.067+0.617<.001<.001312
MESODNA deamination →+0.048+0.507<.001<.001312
OVRegulation of ribonuclease activity →+0.068+0.524<.001<.001311
Each partner links to its Q-omics profile. Showing the 6 strongest of 6,443 associations by consensus.

Exploration