LINC01550

Across TCGA patient cohorts, LINC01550 RNA expression is significantly associated with the protein abundance of many other proteins, with 14,704 significant associations in total. GBM shows the largest number of these associations.

The most reproducible LINC01550-associated proteins across cancer lineages are GRAP2, SEPTIN1, and ARHGEF6_S684. Each is linked with LINC01550 in more than 6 cancer types. Because this analysis shows association rather than direction, both LINC01550-to-partner and partner-to-LINC01550 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, LINC01550 versus GRAP2 in LSCC, with a Pearson correlation of 0.42.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01550→partner) and Y-score (partner→LINC01550) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
LSCC	GRAP2 →	+0.582	+0.571	<.001	<.001	3	7
LSCC	SEPTIN1 →	+0.719	+0.545	<.001	<.001	3	6
UCEC	ARHGEF6_S684 →	+0.635	+0.459	<.001	.003	3	5
HNSC	WDFY4 →	+0.384	+0.556	<.001	<.001	3	5
UCEC	ZAP70 →	+0.565	+0.616	.002	<.001	3	5
LUAD	RPS3A →	-0.185	-0.606	.001	.002	3	5

Each partner links to its Q-omics profile. Showing the 6 strongest of 14,704 associations by consensus.

LINC01550 vs GRAP2 — LSCC

Explore this scatter interactively →