LINC01543

Across TCGA patient cohorts, LINC01543 RNA expression is significantly associated with the go_rna of many other GO terms, with 6,778 significant associations in total. STAD shows the largest number of these associations.

The most reproducible LINC01543-associated GO terms across cancer lineages are tRNA metabolic process, RNA export from nucleus, and DNA-templated transcription termination. Each is linked with LINC01543 in more than 16 cancer types. Because this analysis shows association rather than direction, both LINC01543-to-partner and partner-to-LINC01543 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, tRNA metabolic process grouped by LINC01543-low versus LINC01543-high in ESCA.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01543→partner) and Y-score (partner→LINC01543) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
ESCA	tRNA metabolic process →	+0.051	+0.136	.001	<.001	3	17
STAD	RNA export from nucleus →	+0.074	+0.124	<.001	<.001	3	17
ESCA	DNA-templated transcription termination →	+0.059	+0.155	<.001	.003	3	16
ESCA	DNA-templated transcription elongation →	+0.063	+0.180	.003	<.001	3	16
ESCA	Protein-RNA complex organization →	+0.069	+0.164	.001	.001	3	16
ESCA	rRNA metabolic process →	+0.064	+0.140	.004	.004	2	17

Each partner links to its Q-omics profile. Showing the 6 strongest of 6,778 associations by consensus.

tRNA metabolic process by LINC01543 expression — ESCA

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