LINC01538

Across TCGA patient cohorts, LINC01538 RNA expression is significantly associated with the go_rna of many other GO terms, with 6,188 significant associations in total. STAD shows the largest number of these associations.

The most reproducible LINC01538-associated GO terms across cancer lineages are Regulation of double-strand break repair via nonhomologous end joining, Mitochondrial electron transport, cytochrome c to oxygen, and Peptidyl-lysine modification. Each is linked with LINC01538 in more than 8 cancer types. Because this analysis shows association rather than direction, both LINC01538-to-partner and partner-to-LINC01538 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, Regulation of double-strand break repair via nonhomologous end joining grouped by LINC01538-low versus LINC01538-high in STAD.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01538→partner) and Y-score (partner→LINC01538) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
STAD	Regulation of double-strand break repair via nonhomologous end joining →	+0.075	+0.042	<.001	<.001	3	9
STAD	Mitochondrial electron transport, cytochrome c to oxygen →	+0.115	+0.043	<.001	<.001	3	9
STAD	Peptidyl-lysine modification →	+0.087	+0.039	<.001	<.001	3	9
STAD	Mitochondrial transcription →	+0.081	+0.040	<.001	<.001	3	8
STAD	Establishment of protein localization to membrane →	+0.098	+0.042	<.001	<.001	3	8
STAD	Protein stabilization →	+0.097	+0.040	<.001	<.001	3	8

Each partner links to its Q-omics profile. Showing the 6 strongest of 6,188 associations by consensus.

Regulation of double-strand break repair via nonhomologous end joining by LINC01538 expression — STAD

Explore this box plot interactively →