LINC01499

Across TCGA patient cohorts, LINC01499 RNA expression is significantly associated with the RNA expression of many other genes, with 2,282 significant associations in total. SKCM shows the largest number of these associations.

The most reproducible LINC01499-associated genes across cancer lineages are LINC02309, VN1R7P, and CTBP2P1. Each is linked with LINC01499 in more than 12 cancer types. Because this analysis shows association rather than direction, both LINC01499-to-partner and partner-to-LINC01499 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, LINC01499 versus LINC02309 in DLBC, with a Pearson correlation of 0.81.

RNA expression associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01499→partner) and Y-score (partner→LINC01499) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
DLBC	LINC02309 →	+0.562	+0.362	<.001	<.001	3	13
STAD	VN1R7P →	+0.682	+0.107	<.001	<.001	3	12
SKCM	CTBP2P1 →	+0.567	+0.015	.001	<.001	3	12
TGCT	SORCS3-AS1 →	+0.581	+0.045	<.001	.002	3	12
ESCA	RPS2P25 →	+0.504	+0.109	<.001	.001	3	11
TGCT	SUN5 →	+0.633	+0.051	<.001	.001	3	11

Each partner links to its Q-omics profile. Showing the 6 strongest of 2,282 associations by consensus.

LINC01499 vs LINC02309 — DLBC

Explore this scatter interactively →