LINC01396

Across TCGA patient cohorts, LINC01396 RNA expression is significantly associated with the protein abundance of many other proteins, with 7,768 significant associations in total. GBM shows the largest number of these associations.

The most reproducible LINC01396-associated proteins across cancer lineages are VEZF1, SPTLC2, and MAP2_S1480. Each is linked with LINC01396 in more than 2 cancer types. Because this analysis shows association rather than direction, both LINC01396-to-partner and partner-to-LINC01396 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, LINC01396 versus VEZF1 in GBM, with a Pearson correlation of 0.35.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01396→partner) and Y-score (partner→LINC01396) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
GBM	VEZF1 →	+0.443	+0.616	<.001	<.001	3	3
GBM	SPTLC2 →	-0.301	-0.411	.001	.001	3	3
OV	MAP2_S1480 →	+0.924	+0.165	.002	.009	3	3
OV	CARD9_S460 →	-0.635	-0.123	.009	.009	3	2
GBM	ADGRE5 →	-0.639	-0.593	<.001	<.001	3	2
OV	DDX21_S89 →	-0.755	-0.101	.007	.001	3	2

Each partner links to its Q-omics profile. Showing the 6 strongest of 7,768 associations by consensus.

LINC01396 vs VEZF1 — GBM

Explore this scatter interactively →