LINC01309

Across TCGA patient cohorts, LINC01309 RNA expression is significantly associated with the go_rna of many other GO terms, with 2,948 significant associations in total. STAD shows the largest number of these associations.

The most reproducible LINC01309-associated GO terms across cancer lineages are tRNA metabolic process, rRNA transcription, and Nucleobase-containing compound transport. Each is linked with LINC01309 in more than 6 cancer types. Because this analysis shows association rather than direction, both LINC01309-to-partner and partner-to-LINC01309 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, tRNA metabolic process grouped by LINC01309-low versus LINC01309-high in ESCA.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01309→partner) and Y-score (partner→LINC01309) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
ESCA	tRNA metabolic process →	+0.077	+0.174	<.001	.001	3	7
ESCA	rRNA transcription →	+0.083	+0.140	<.001	<.001	3	7
ESCA	Nucleobase-containing compound transport →	+0.077	+0.134	<.001	.001	3	6
ESCA	Negative regulation of telomere maintenance via telomere lengthening →	+0.075	+0.134	<.001	.001	3	6
STAD	Negative regulation of DNA repair →	+0.045	+0.164	<.001	<.001	3	6
ESCA	Transcription by RNA polymerase I →	+0.085	+0.181	<.001	.001	3	6

Each partner links to its Q-omics profile. Showing the 6 strongest of 2,948 associations by consensus.

tRNA metabolic process by LINC01309 expression — ESCA

Explore this box plot interactively →