LINC01297

Across TCGA patient cohorts, LINC01297 RNA expression is significantly associated with the go_rna of many other GO terms, with 6,599 significant associations in total. STAD shows the largest number of these associations.

The most reproducible LINC01297-associated GO terms across cancer lineages are tRNA modification, RNA 3'-end processing, and Positive regulation of amide metabolic process. Each is linked with LINC01297 in more than 16 cancer types. Because this analysis shows association rather than direction, both LINC01297-to-partner and partner-to-LINC01297 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, tRNA modification grouped by LINC01297-low versus LINC01297-high in STAD.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01297→partner) and Y-score (partner→LINC01297) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
STAD	tRNA modification →	+0.058	+0.132	<.001	<.001	3	17
ESCA	RNA 3'-end processing →	+0.071	+0.236	<.001	<.001	3	17
STAD	Positive regulation of amide metabolic process →	+0.064	+0.187	<.001	<.001	3	17
STAD	Regulation of DNA-directed DNA polymerase activity →	+0.077	+0.158	<.001	<.001	3	16
STAD	Macromolecule methylation →	+0.061	+0.149	<.001	<.001	3	16
STAD	Regulation of mRNA catabolic process →	+0.053	+0.142	<.001	<.001	3	16

Each partner links to its Q-omics profile. Showing the 6 strongest of 6,599 associations by consensus.

tRNA modification by LINC01297 expression — STAD

Explore this box plot interactively →