LINC01290

Across TCGA patient cohorts, LINC01290 RNA expression is significantly associated with the protein abundance of many other proteins, with 12,329 significant associations in total. HNSC shows the largest number of these associations.

The most reproducible LINC01290-associated proteins across cancer lineages are ARFGAP1, PHC3, and SMARCC2. Each is linked with LINC01290 in more than 5 cancer types. Because this analysis shows association rather than direction, both LINC01290-to-partner and partner-to-LINC01290 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, LINC01290 versus ARFGAP1 in LSCC, with a Pearson correlation of -0.51.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01290→partner) and Y-score (partner→LINC01290) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
LSCC	ARFGAP1 →	-0.266	-0.909	<.001	<.001	3	6
HNSC	PHC3 →	+0.449	+1.341	<.001	<.001	3	4
HNSC	SMARCC2 →	+0.191	+1.193	<.001	<.001	3	4
HNSC	ARHGEF26_S222 →	+0.938	+0.934	<.001	<.001	3	4
BRCA	FNDC3B →	-0.409	-0.536	<.001	.003	3	4
BRCA	MPO →	-0.828	-0.618	<.001	<.001	3	4

Each partner links to its Q-omics profile. Showing the 6 strongest of 12,329 associations by consensus.

LINC01290 vs ARFGAP1 — LSCC

Explore this scatter interactively →