LINC01239

Across TCGA patient cohorts, LINC01239 RNA expression is significantly associated with the go_rna of many other GO terms, with 7,006 significant associations in total. KIRC shows the largest number of these associations.

The most reproducible LINC01239-associated GO terms across cancer lineages are Regulation of organelle assembly, Regulation of cell projection assembly, and Obsolete ubiquitin-dependent ERAD pathway. Each is linked with LINC01239 in more than 21 cancer types. Because this analysis shows association rather than direction, both LINC01239-to-partner and partner-to-LINC01239 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, Regulation of organelle assembly grouped by LINC01239-low versus LINC01239-high in STAD.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01239→partner) and Y-score (partner→LINC01239) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
STAD	Regulation of organelle assembly →	+0.042	+0.315	<.001	<.001	3	22
STAD	Regulation of cell projection assembly →	+0.038	+0.317	<.001	<.001	3	22
STAD	Obsolete ubiquitin-dependent ERAD pathway →	+0.051	+0.400	<.001	<.001	3	21
STAD	Cytoskeleton-dependent intracellular transport →	+0.044	+0.511	<.001	<.001	3	21
STAD	Positive regulation of TOR signaling →	+0.051	+0.300	<.001	.001	3	21
STAD	Regulation of intracellular protein transport →	+0.051	+0.381	<.001	<.001	3	21

Each partner links to its Q-omics profile. Showing the 6 strongest of 7,006 associations by consensus.

Regulation of organelle assembly by LINC01239 expression — STAD

Explore this box plot interactively →