LINC01229

Across TCGA patient cohorts, LINC01229 RNA expression is significantly associated with the go_rna of many other GO terms, with 7,134 significant associations in total. STAD shows the largest number of these associations.

The most reproducible LINC01229-associated GO terms across cancer lineages are Peptidyl-lysine modification, TOR signaling, and Vacuolar transport. Each is linked with LINC01229 in more than 25 cancer types. Because this analysis shows association rather than direction, both LINC01229-to-partner and partner-to-LINC01229 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, Peptidyl-lysine modification grouped by LINC01229-low versus LINC01229-high in ESCA.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01229→partner) and Y-score (partner→LINC01229) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
ESCA	Peptidyl-lysine modification →	+0.046	+0.171	<.001	<.001	3	26
STAD	TOR signaling →	+0.048	+0.103	<.001	<.001	3	26
STAD	Vacuolar transport →	+0.044	+0.079	<.001	<.001	3	25
STAD	TORC1 signaling →	+0.051	+0.093	<.001	<.001	3	25
ESCA	Protein localization to vacuole →	+0.045	+0.176	<.001	<.001	3	24
ESCA	Response to amino acid starvation →	+0.057	+0.180	<.001	<.001	3	24

Each partner links to its Q-omics profile. Showing the 6 strongest of 7,134 associations by consensus.

Peptidyl-lysine modification by LINC01229 expression — ESCA

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