LINC01138

Across TCGA patient cohorts, LINC01138 mutation is significantly associated with the RNA expression of many other genes, with 623 significant associations in total. UCEC shows the largest number of these associations.

The most reproducible LINC01138-associated genes across cancer lineages are RNU6-912P, DNAJA1P1, and RPL9P13. Each is linked with LINC01138 in more than 1 cancer types. Because this analysis shows association rather than direction, both LINC01138-to-partner and partner-to-LINC01138 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, RNU6-912P grouped by LINC01138-low versus LINC01138-high in CESC.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01138→partner) and Y-score (partner→LINC01138) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
CESC	RNU6-912P →	+0.462	+5.010	<.001	.009	3	1
CESC	DNAJA1P1 →	+0.050	+5.306	<.001	.006	3	1
CESC	RPL9P13 →	+0.147	+5.010	<.001	.009	3	1
CESC	POLR2DP1 →	+0.124	+5.669	<.001	.003	3	1
UCEC	APMAP →	+0.613	+3.353	.006	.005	3	1
UCEC	ACD →	+0.617	+3.617	<.001	.001	3	1

Each partner links to its Q-omics profile. Showing the 6 strongest of 623 associations by consensus.

RNU6-912P by LINC01138 expression — CESC

Explore this box plot interactively →