LINC01090

Across TCGA patient cohorts, LINC01090 RNA expression is significantly associated with the go_rna of many other GO terms, with 7,062 significant associations in total. STAD shows the largest number of these associations.

The most reproducible LINC01090-associated GO terms across cancer lineages are mRNA 3'-end processing, Negative regulation of mRNA processing, and Mitochondrial gene expression. Each is linked with LINC01090 in more than 15 cancer types. Because this analysis shows association rather than direction, both LINC01090-to-partner and partner-to-LINC01090 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, mRNA 3'-end processing grouped by LINC01090-low versus LINC01090-high in ESCA.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01090→partner) and Y-score (partner→LINC01090) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
ESCA	mRNA 3'-end processing →	+0.073	+0.174	.002	<.001	3	16
STAD	Negative regulation of mRNA processing →	+0.049	+0.143	<.001	<.001	3	15
STAD	Mitochondrial gene expression →	+0.059	+0.170	<.001	<.001	3	14
STAD	Establishment of RNA localization →	+0.058	+0.145	<.001	<.001	3	14
STAD	tRNA metabolic process →	+0.054	+0.152	<.001	<.001	3	14
STAD	Aerobic respiration →	+0.061	+0.176	<.001	<.001	3	14

Each partner links to its Q-omics profile. Showing the 6 strongest of 7,062 associations by consensus.

mRNA 3'-end processing by LINC01090 expression — ESCA

Explore this box plot interactively →