LINC01017

Across TCGA patient cohorts, LINC01017 RNA expression is significantly associated with the go_rna of many other GO terms, with 6,305 significant associations in total. STAD shows the largest number of these associations.

The most reproducible LINC01017-associated GO terms across cancer lineages are Methylation, Nucleolar large rRNA transcription by RNA polymerase I, and Regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay. Each is linked with LINC01017 in more than 10 cancer types. Because this analysis shows association rather than direction, both LINC01017-to-partner and partner-to-LINC01017 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, Methylation grouped by LINC01017-low versus LINC01017-high in STAD.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01017→partner) and Y-score (partner→LINC01017) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
STAD	Methylation →	+0.082	+0.178	<.001	<.001	3	11
STAD	Nucleolar large rRNA transcription by RNA polymerase I →	+0.088	+0.156	<.001	<.001	3	10
ESCA	Regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay →	+0.077	+0.093	<.001	.002	3	10
STAD	Nucleoside phosphate biosynthetic process →	+0.084	+0.146	<.001	<.001	3	10
STAD	U2-type prespliceosome assembly →	+0.110	+0.147	<.001	<.001	3	10
STAD	Regulation of endosome size →	+0.074	+0.145	<.001	<.001	3	10

Each partner links to its Q-omics profile. Showing the 6 strongest of 6,305 associations by consensus.

Methylation by LINC01017 expression — STAD

Explore this box plot interactively →