LINC01001

Across TCGA patient cohorts, LINC01001 mutation is significantly associated with the RNA expression of many other genes, with 8 significant associations in total. UCEC shows the largest number of these associations.

The most reproducible LINC01001-associated genes across cancer lineages are MIR4654, CA15P2, and RNA5SP321. Each is linked with LINC01001 in more than 1 cancer types. Because this analysis shows association rather than direction, both LINC01001-to-partner and partner-to-LINC01001 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, MIR4654 grouped by LINC01001-low versus LINC01001-high in UCEC.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01001→partner) and Y-score (partner→LINC01001) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
UCEC	MIR4654 →	+0.902	+5.771	<.001	.003	3	1
UCEC	CA15P2 →	+0.122	+5.031	.003	.009	3	1
UCEC	RNA5SP321 →	+2.154	+5.358	<.001	.006	3	1
UCEC	RNA5SP205 →	+1.566	+5.852	<.001	.003	3	1
UCEC	SNORA10B →	+0.602	+5.031	<.001	.009	3	1
UCEC	RAC1P7 →	+0.265	+5.771	.006	.003	3	1

Each partner links to its Q-omics profile. Showing the 6 strongest of 8 associations by consensus.

MIR4654 by LINC01001 expression — UCEC

Explore this box plot interactively →