Across TCGA patient cohorts, LINC00839 RNA expression is significantly associated with the protein abundance of many other proteins, with 10,338 significant associations in total. BRCA shows the largest number of these associations.

The most reproducible LINC00839-associated proteins across cancer lineages are AVL9, WDR75, and TUBB6. Each is linked with LINC00839 in more than 3 cancer types. Because this analysis shows association rather than direction, both LINC00839-to-partner and partner-to-LINC00839 results are reported.

Each partner links to its own Q-omics profile.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC00839→partner) and Y-score (partner→LINC00839) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
LUAD	AVL9 →	-0.405	-0.536	<.001	<.001	3	4
BRCA	WDR75 →	+0.361	+0.979	<.001	<.001	3	3
BRCA	TUBB6 →	+0.599	+0.766	<.001	.003	3	3
HNSC	TBL1XR1 →	+0.303	+0.856	.007	.006	3	3
BRCA	POLR1E →	+0.360	+1.052	.003	<.001	3	3
BRCA	PUS7 →	+0.492	+1.131	<.001	<.001	3	3

Each partner links to its Q-omics profile. Showing the 6 strongest of 10,338 associations by consensus.

Exploration

LINC00839 survival (RNA) · tumor vs normal (RNA) · all LINC00839 data types