Across TCGA patient cohorts, LINC00839 mutation is significantly associated with the RNA expression of many other genes, with 627 significant associations in total. UCEC shows the largest number of these associations.

The most reproducible LINC00839-associated genes across cancer lineages are OR10S1, RNA5SP289, and RNU6-183P. Each is linked with LINC00839 in more than 1 cancer types. Because this analysis shows association rather than direction, both LINC00839-to-partner and partner-to-LINC00839 results are reported.

Each partner links to its own Q-omics profile.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC00839→partner) and Y-score (partner→LINC00839) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
CESC	OR10S1 →	+0.042	+4.539	<.001	.008	3	1
CESC	RNA5SP289 →	+0.212	+4.539	<.001	.008	3	1
CESC	RNU6-183P →	+0.350	+5.569	<.001	.002	3	1
CESC	PFN1P12 →	+0.088	+4.705	<.001	.003	3	1
CESC	NDUFB4P5 →	+0.094	+4.969	<.001	.004	3	1
CESC	SEPHS1P7 →	+0.031	+6.164	<.001	<.001	3	1

Each partner links to its Q-omics profile. Showing the 6 strongest of 627 associations by consensus.

Exploration

LINC00839 survival (RNA) · tumor vs normal (RNA) · all LINC00839 data types