LINC00839

mutation — cross-omics
Cross-omicsMUTATION → PROTEIN-RPPAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, LINC00839 mutation is significantly associated with the total protein of many other genes, with 9 significant associations in total. UCEC shows the largest number of these associations.

The most reproducible LINC00839-associated genes across cancer lineages are Mre11, Tuberin_pT1462, and BRD4. Each is linked with LINC00839 in more than 1 cancer types. Because this analysis shows association rather than direction, both LINC00839-to-partner and partner-to-LINC00839 results are reported.

Each partner links to its own Q-omics profile.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC00839→partner) and Y-score (partner→LINC00839) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
UCECMre11 →-0.122-3.000.014.03731
UCECTuberin_pT1462 →+0.360+2.817.007.03631
UCECBRD4 →+0.329+2.814.045.03631
UCECG6PD →-0.376-3.000.044.03721
UCECCaspase-8 →-0.387-3.000.007.03621
UCECFibronectin →-0.423-3.000.026.03711
Each partner links to its Q-omics profile. Showing the 6 strongest of 9 associations by consensus.

Exploration