LINC00689

Across TCGA patient cohorts, LINC00689 RNA expression is significantly associated with the protein abundance of many other proteins, with 9,644 significant associations in total. GBM shows the largest number of these associations.

The most reproducible LINC00689-associated proteins across cancer lineages are PTBP2, NAXD, and PARP14. Each is linked with LINC00689 in more than 3 cancer types. Because this analysis shows association rather than direction, both LINC00689-to-partner and partner-to-LINC00689 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, LINC00689 versus PTBP2 in GBM, with a Pearson correlation of 0.35.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC00689→partner) and Y-score (partner→LINC00689) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
GBM	PTBP2 →	+0.421	+1.332	.003	<.001	3	4
LUAD	NAXD →	+0.321	+0.556	<.001	.001	3	3
CCRCC	PARP14 →	-0.295	-0.151	<.001	<.001	3	3
GBM	RFX3_S155 →	+0.873	+1.748	<.001	<.001	3	3
GBM	RPS3 →	-0.211	-1.584	<.001	.001	3	3
CCRCC	SHANK3_S1570 →	+0.691	+0.148	<.001	.002	3	3

Each partner links to its Q-omics profile. Showing the 6 strongest of 9,644 associations by consensus.

LINC00689 vs PTBP2 — GBM

Explore this scatter interactively →