LINC00649

Across TCGA patient cohorts, LINC00649 RNA expression is significantly associated with the go_rna of many other GO terms, with 7,085 significant associations in total. BRCA shows the largest number of these associations.

The most reproducible LINC00649-associated GO terms across cancer lineages are Golgi vesicle transport, Regulation of proteasomal protein catabolic process, and Negative regulation of gene expression, epigenetic. Each is linked with LINC00649 in more than 24 cancer types. Because this analysis shows association rather than direction, both LINC00649-to-partner and partner-to-LINC00649 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, Golgi vesicle transport grouped by LINC00649-low versus LINC00649-high in DLBC.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC00649→partner) and Y-score (partner→LINC00649) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
DLBC	Golgi vesicle transport →	+0.062	+1.225	.007	<.001	3	25
STAD	Regulation of proteasomal protein catabolic process →	+0.035	+0.310	<.001	<.001	3	24
DLBC	Negative regulation of gene expression, epigenetic →	+0.092	+1.127	.002	.002	3	24
STAD	Vesicle-mediated transport to the plasma membrane →	+0.045	+0.535	<.001	<.001	3	24
DLBC	Post-Golgi vesicle-mediated transport →	+0.058	+0.942	.001	<.001	3	24
STAD	Regulation of ubiquitin-dependent protein catabolic process →	+0.036	+0.376	<.001	<.001	3	24

Each partner links to its Q-omics profile. Showing the 6 strongest of 7,085 associations by consensus.

Golgi vesicle transport by LINC00649 expression — DLBC

Explore this box plot interactively →