LINC00639

Across TCGA patient cohorts, LINC00639 RNA expression is significantly associated with the protein abundance of many other proteins, with 14,816 significant associations in total. LUAD shows the largest number of these associations.

The most reproducible LINC00639-associated proteins across cancer lineages are RPS2, SHMT2, and IL33. Each is linked with LINC00639 in more than 4 cancer types. Because this analysis shows association rather than direction, both LINC00639-to-partner and partner-to-LINC00639 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, LINC00639 versus RPS2 in HNSC, with a Pearson correlation of -0.27.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC00639→partner) and Y-score (partner→LINC00639) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
HNSC	RPS2 →	-0.235	-0.335	<.001	<.001	3	5
LUAD	SHMT2 →	-0.456	-0.286	<.001	<.001	3	5
BRCA	IL33 →	+1.121	+0.307	<.001	<.001	3	5
GBM	RPL7 →	-0.355	-0.725	<.001	<.001	3	4
GBM	RPS3A →	-0.224	-0.885	<.001	<.001	3	4
GBM	SEPTIN4 →	+0.570	+0.668	.001	.002	2	5

Each partner links to its Q-omics profile. Showing the 6 strongest of 14,816 associations by consensus.

LINC00639 vs RPS2 — HNSC

Explore this scatter interactively →