LINC00639

Across TCGA patient cohorts, LINC00639 mutation is significantly associated with the RNA expression of many other genes, with 51 significant associations in total. UCEC shows the largest number of these associations.

The most reproducible LINC00639-associated genes across cancer lineages are RNU6-1169P, OR13C3, and MIR708. Each is linked with LINC00639 in more than 1 cancer types. Because this analysis shows association rather than direction, both LINC00639-to-partner and partner-to-LINC00639 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, RNU6-1169P grouped by LINC00639-low versus LINC00639-high in SKCM.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC00639→partner) and Y-score (partner→LINC00639) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
SKCM	RNU6-1169P →	+0.425	+5.947	<.001	<.001	3	1
SKCM	OR13C3 →	+0.035	+5.080	<.001	.004	3	1
SKCM	MIR708 →	+0.548	+4.563	<.001	.004	3	1
SKCM	RN7SKP286 →	+0.129	+6.810	<.001	<.001	3	1
SKCM	ATP5MFP1 →	+0.245	+4.595	<.001	.004	3	1
SKCM	OR5K1 →	+0.036	+5.797	<.001	.001	3	1

Each partner links to its Q-omics profile. Showing the 6 strongest of 51 associations by consensus.

RNU6-1169P by LINC00639 expression — SKCM

Explore this box plot interactively →