LINC00564

Across TCGA patient cohorts, LINC00564 RNA expression is significantly associated with the go_rna of many other GO terms, with 5,656 significant associations in total. STAD shows the largest number of these associations.

The most reproducible LINC00564-associated GO terms across cancer lineages are Mitotic metaphase chromosome alignment, Mitochondrial gene expression, and Positive regulation of double-strand break repair via nonhomologous end joining. Each is linked with LINC00564 in more than 8 cancer types. Because this analysis shows association rather than direction, both LINC00564-to-partner and partner-to-LINC00564 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, Mitotic metaphase chromosome alignment grouped by LINC00564-low versus LINC00564-high in STAD.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC00564→partner) and Y-score (partner→LINC00564) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
STAD	Mitotic metaphase chromosome alignment →	+0.134	+0.052	<.001	<.001	3	9
STAD	Mitochondrial gene expression →	+0.135	+0.066	<.001	<.001	3	8
STAD	Positive regulation of double-strand break repair via nonhomologous end joining →	+0.086	+0.058	<.001	<.001	3	8
STAD	Positive regulation of telomerase activity →	+0.114	+0.052	<.001	<.001	3	8
STAD	Mitochondrial DNA replication →	+0.110	+0.051	<.001	<.001	3	8
STAD	Regulation of DNA repair →	+0.115	+0.060	<.001	<.001	3	8

Each partner links to its Q-omics profile. Showing the 6 strongest of 5,656 associations by consensus.

Mitotic metaphase chromosome alignment by LINC00564 expression — STAD

Explore this box plot interactively →