LINC00562

Across TCGA patient cohorts, LINC00562 RNA expression is significantly associated with the protein abundance of many other proteins, with 9,007 significant associations in total. GBM shows the largest number of these associations.

The most reproducible LINC00562-associated proteins across cancer lineages are SOGA1_S1255, BAD_S118, and CAB39L. Each is linked with LINC00562 in more than 3 cancer types. Because this analysis shows association rather than direction, both LINC00562-to-partner and partner-to-LINC00562 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, LINC00562 versus SOGA1_S1255 in GBM, with a Pearson correlation of 0.30.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC00562→partner) and Y-score (partner→LINC00562) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
GBM	SOGA1_S1255 →	+0.498	+0.287	<.001	<.001	3	4
UCEC	BAD_S118 →	-0.280	-0.711	.006	.003	3	4
BRCA	CAB39L →	+0.526	+0.134	<.001	.007	3	4
COAD	HMGB1 →	+0.318	+0.262	<.001	<.001	3	4
LUAD	PGRMC2_S104 →	-0.822	-0.243	.001	.001	3	4
GBM	PTPN12_S606 →	-0.478	-0.312	<.001	<.001	3	4

Each partner links to its Q-omics profile. Showing the 6 strongest of 9,007 associations by consensus.

LINC00562 vs SOGA1_S1255 — GBM

Explore this scatter interactively →