Across TCGA patient cohorts, LINC00539 RNA expression is significantly associated with the RNA expression of many other genes, with 18,871 significant associations in total. UVM shows the largest number of these associations.

The most reproducible LINC00539-associated genes across cancer lineages are ZNF169, RGL4, and ZNF731P. Each is linked with LINC00539 in more than 30 cancer types. Because this analysis shows association rather than direction, both LINC00539-to-partner and partner-to-LINC00539 results are reported.

Each partner links to its own Q-omics profile.

RNA expression associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC00539→partner) and Y-score (partner→LINC00539) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
UCS	ZNF169 →	+0.879	+0.640	<.001	<.001	3	31
DLBC	RGL4 →	+1.133	+1.163	.001	.001	3	31
UVM	ZNF731P →	+1.848	+0.575	<.001	<.001	3	30
LAML	MIPEPP3 →	+1.685	+2.150	<.001	<.001	3	30
SKCM	GVINP1 →	+1.118	+0.516	<.001	<.001	3	30
UVM	N4BP2L2 →	+1.517	+0.597	<.001	<.001	3	30

Each partner links to its Q-omics profile. Showing the 6 strongest of 18,871 associations by consensus.

Exploration

LINC00539 survival (RNA) · tumor vs normal (RNA) · all LINC00539 data types