Across TCGA patient cohorts, LINC00539 RNA expression is significantly associated with the protein abundance of many other proteins, with 9,806 significant associations in total. HNSC shows the largest number of these associations.

The most reproducible LINC00539-associated proteins across cancer lineages are ELF1_S187, RNASEH2B, and N4BP2L2. Each is linked with LINC00539 in more than 4 cancer types. Because this analysis shows association rather than direction, both LINC00539-to-partner and partner-to-LINC00539 results are reported.

Each partner links to its own Q-omics profile.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC00539→partner) and Y-score (partner→LINC00539) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
HNSC	ELF1_S187 →	+0.488	+0.534	.001	.002	3	5
LSCC	RNASEH2B →	+0.425	+0.484	<.001	<.001	3	4
HNSC	N4BP2L2 →	+0.372	+0.452	<.001	.009	3	4
LSCC	RNASEH2A →	+0.290	+0.458	<.001	<.001	3	4
HNSC	RNASEH2C →	+0.449	+0.581	<.001	<.001	3	4
HNSC	PRR12_T738 →	+0.788	+0.548	<.001	.002	3	3

Each partner links to its Q-omics profile. Showing the 6 strongest of 9,806 associations by consensus.

Exploration

LINC00539 survival (RNA) · tumor vs normal (RNA) · all LINC00539 data types