LINC00538

Across TCGA patient cohorts, LINC00538 RNA expression is significantly associated with the go_rna of many other GO terms, with 6,839 significant associations in total. STAD shows the largest number of these associations.

The most reproducible LINC00538-associated GO terms across cancer lineages are Golgi organization, Nucleotide-excision repair, and Transcription by RNA polymerase III. Each is linked with LINC00538 in more than 20 cancer types. Because this analysis shows association rather than direction, both LINC00538-to-partner and partner-to-LINC00538 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, Golgi organization grouped by LINC00538-low versus LINC00538-high in ESCA.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC00538→partner) and Y-score (partner→LINC00538) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
ESCA	Golgi organization →	+0.060	+0.106	<.001	<.001	3	21
ESCA	Nucleotide-excision repair →	+0.055	+0.118	<.001	<.001	3	20
ESCA	Transcription by RNA polymerase III →	+0.060	+0.074	<.001	<.001	3	20
ESCA	RNA export from nucleus →	+0.075	+0.093	<.001	<.001	3	20
LAML	Protein localization to chromosome, telomeric region →	+0.055	+0.011	<.001	.003	2	21
TGCT	Telencephalon development →	+0.036	+0.022	<.001	.003	3	20

Each partner links to its Q-omics profile. Showing the 6 strongest of 6,839 associations by consensus.

Golgi organization by LINC00538 expression — ESCA

Explore this box plot interactively →