LINC00534

Across TCGA patient cohorts, LINC00534 RNA expression is significantly associated with the go_rna of many other GO terms, with 6,298 significant associations in total. KIRC shows the largest number of these associations.

The most reproducible LINC00534-associated GO terms across cancer lineages are Protein localization to cytoskeleton, Regulation of protein ubiquitination, and Regulation of transcription by RNA polymerase III. Each is linked with LINC00534 in more than 14 cancer types. Because this analysis shows association rather than direction, both LINC00534-to-partner and partner-to-LINC00534 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, Protein localization to cytoskeleton grouped by LINC00534-low versus LINC00534-high in STAD.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC00534→partner) and Y-score (partner→LINC00534) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
STAD	Protein localization to cytoskeleton →	+0.084	+0.217	<.001	<.001	3	15
STAD	Regulation of protein ubiquitination →	+0.050	+0.115	<.001	.001	3	13
ESCA	Regulation of transcription by RNA polymerase III →	+0.047	+0.196	.001	.001	2	14
STAD	Mitochondrial respiratory chain complex assembly →	+0.081	+0.151	<.001	<.001	3	13
STAD	Negative regulation of DNA metabolic process →	+0.072	+0.237	<.001	<.001	3	13
STAD	DNA biosynthetic process →	+0.089	+0.189	<.001	<.001	3	13

Each partner links to its Q-omics profile. Showing the 6 strongest of 6,298 associations by consensus.

Protein localization to cytoskeleton by LINC00534 expression — STAD

Explore this box plot interactively →