LINC00504

Across TCGA patient cohorts, LINC00504 RNA expression is significantly associated with the protein abundance of many other proteins, with 12,454 significant associations in total. BRCA shows the largest number of these associations.

The most reproducible LINC00504-associated proteins across cancer lineages are PANK4, RPL13, and RPL23A. Each is linked with LINC00504 in more than 3 cancer types. Because this analysis shows association rather than direction, both LINC00504-to-partner and partner-to-LINC00504 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, LINC00504 versus PANK4 in BRCA, with a Pearson correlation of 0.33.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC00504→partner) and Y-score (partner→LINC00504) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
BRCA	PANK4 →	+0.251	+1.472	<.001	.001	3	4
BRCA	RPL13 →	-0.351	-1.395	<.001	<.001	3	3
CCRCC	RPL23A →	-0.262	-0.229	<.001	<.001	3	3
BRCA	RPL6 →	-0.348	-1.194	<.001	<.001	3	3
BRCA	RPS23 →	-0.330	-1.798	<.001	<.001	3	3
COAD	RPS25 →	-0.276	-0.051	.007	.003	2	4

Each partner links to its Q-omics profile. Showing the 6 strongest of 12,454 associations by consensus.

LINC00504 vs PANK4 — BRCA

Explore this scatter interactively →