LINC00479

Across TCGA patient cohorts, LINC00479 RNA expression is significantly associated with the go_rna of many other GO terms, with 6,950 significant associations in total. KIRC shows the largest number of these associations.

The most reproducible LINC00479-associated GO terms across cancer lineages are Negative regulation of RNA splicing, Macromolecule deacylation, and Methylation. Each is linked with LINC00479 in more than 19 cancer types. Because this analysis shows association rather than direction, both LINC00479-to-partner and partner-to-LINC00479 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, Negative regulation of RNA splicing grouped by LINC00479-low versus LINC00479-high in STAD.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC00479→partner) and Y-score (partner→LINC00479) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
STAD	Negative regulation of RNA splicing →	+0.051	+0.256	<.001	<.001	3	20
STAD	Macromolecule deacylation →	+0.065	+0.399	<.001	<.001	3	20
STAD	Methylation →	+0.039	+0.254	<.001	<.001	3	19
STAD	Macromolecule methylation →	+0.042	+0.246	<.001	<.001	3	19
STAD	Mitochondrial transport →	+0.043	+0.242	<.001	<.001	3	19
STAD	tRNA processing →	+0.043	+0.249	<.001	<.001	3	19

Each partner links to its Q-omics profile. Showing the 6 strongest of 6,950 associations by consensus.

Negative regulation of RNA splicing by LINC00479 expression — STAD

Explore this box plot interactively →