LINC00479

Across TCGA patient cohorts, LINC00479 mutation is significantly associated with the RNA expression of many other genes, with 447 significant associations in total. UCEC shows the largest number of these associations.

The most reproducible LINC00479-associated genes across cancer lineages are IBA57, MRPS11, and SERHL2. Each is linked with LINC00479 in more than 1 cancer types. Because this analysis shows association rather than direction, both LINC00479-to-partner and partner-to-LINC00479 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, IBA57 grouped by LINC00479-low versus LINC00479-high in UCEC.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC00479→partner) and Y-score (partner→LINC00479) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
UCEC	IBA57 →	+0.568	+3.364	.001	.005	3	1
UCEC	MRPS11 →	+0.640	+3.407	<.001	.004	3	1
UCEC	SERHL2 →	+0.647	+3.354	.001	.005	3	1
UCEC	SAPCD2 →	+0.970	+3.354	.001	.005	3	1
UCEC	C2orf78 →	+0.170	+3.512	.001	.004	3	1
UCEC	HYKK →	+0.465	+3.332	.002	.005	3	1

Each partner links to its Q-omics profile. Showing the 6 strongest of 447 associations by consensus.

IBA57 by LINC00479 expression — UCEC

Explore this box plot interactively →