LINC00428

Across TCGA patient cohorts, LINC00428 RNA expression is significantly associated with the go_rna of many other GO terms, with 6,323 significant associations in total. STAD shows the largest number of these associations.

The most reproducible LINC00428-associated GO terms across cancer lineages are Organophosphate ester transport, Golgi lumen acidification, and Regulation of intrinsic apoptotic signaling pathway. Each is linked with LINC00428 in more than 5 cancer types. Because this analysis shows association rather than direction, both LINC00428-to-partner and partner-to-LINC00428 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, Organophosphate ester transport grouped by LINC00428-low versus LINC00428-high in STAD.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC00428→partner) and Y-score (partner→LINC00428) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
STAD	Organophosphate ester transport →	+0.064	+0.074	<.001	<.001	3	6
STAD	Golgi lumen acidification →	+0.083	+0.074	<.001	<.001	3	6
STAD	Regulation of intrinsic apoptotic signaling pathway →	+0.094	+0.070	<.001	<.001	3	5
STAD	Ribose phosphate biosynthetic process →	+0.100	+0.078	<.001	<.001	3	5
STAD	Vesicle budding from membrane →	+0.102	+0.076	<.001	<.001	3	5
STAD	Negative regulation of stress-activated protein kinase signaling cascade →	+0.079	+0.081	<.001	<.001	3	5

Each partner links to its Q-omics profile. Showing the 6 strongest of 6,323 associations by consensus.

Organophosphate ester transport by LINC00428 expression — STAD

Explore this box plot interactively →