LINC00427

Across TCGA patient cohorts, LINC00427 RNA expression is significantly associated with the RNA expression of many other genes, with 14,276 significant associations in total. UVM shows the largest number of these associations.

The most reproducible LINC00427-associated genes across cancer lineages are CLK4, PNISR, and TRIM52. Each is linked with LINC00427 in more than 27 cancer types. Because this analysis shows association rather than direction, both LINC00427-to-partner and partner-to-LINC00427 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, LINC00427 versus CLK4 in UVM, with a Pearson correlation of 0.54.

RNA expression associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC00427→partner) and Y-score (partner→LINC00427) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
UVM	CLK4 →	+1.281	+0.186	<.001	<.001	3	28
UVM	PNISR →	+1.550	+0.196	<.001	<.001	3	28
UVM	TRIM52 →	+1.071	+0.196	<.001	<.001	3	28
KIRC	FAM13A-AS1 →	+0.965	+0.382	<.001	<.001	3	27
KIRC	N4BP2L2-IT2 →	+0.763	+0.379	<.001	<.001	3	27
UVM	ZKSCAN2-DT →	+1.016	+0.185	<.001	<.001	3	27

Each partner links to its Q-omics profile. Showing the 6 strongest of 14,276 associations by consensus.

LINC00427 vs CLK4 — UVM

Explore this scatter interactively →